IL_7QVP_108
3D structure
- PDB id
- 7QVP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human collided disome (di-ribosome) stalled on XBP1 mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- UGGAAUG*CGAGAGA
- Length
- 14 nucleotides
- Bulged bases
- 7QVP|1|L5|U|2661, 7QVP|1|L5|A|2674
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7QVP_108 not in the Motif Atlas
- Homologous match to IL_8C3A_079
- Geometric discrepancy: 0.1559
- The information below is about IL_8C3A_079
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_60192.2
- Basepair signature
- cWW-tSH-tSH-tSS-tHS-L-R-cWW
- Number of instances in this motif group
- 3
Unit IDs
7QVP|1|L5|U|2656
7QVP|1|L5|G|2657
7QVP|1|L5|G|2658
7QVP|1|L5|A|2659
7QVP|1|L5|A|2660
7QVP|1|L5|U|2661
7QVP|1|L5|G|2662
*
7QVP|1|L5|C|2672
7QVP|1|L5|G|2673
7QVP|1|L5|A|2674
7QVP|1|L5|G|2675
7QVP|1|L5|A|2676
7QVP|1|L5|G|2677
7QVP|1|L5|A|2678
Current chains
- Chain L5
- 28S ribosomal RNA
Nearby chains
- Chain LR
- 60S ribosomal protein L19
- Chain LZ
- 60S ribosomal protein L27
- Chain Lc
- 60S ribosomal protein L30
- Chain Lp
- 60S ribosomal protein L37a
- Chain SN
- 40S ribosomal protein S13
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