IL_7QVP_213

3D structure

PDB id

7QVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human collided disome (di-ribosome) stalled on XBP1 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GG*CGCC

Length

6 nucleotides

Bulged bases

7QVP|1|L6|C|1378

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QVP_213 not in the Motif Atlas

Geometric match to IL_1NBS_009

Geometric discrepancy: 0.2596

The information below is about IL_1NBS_009

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_71421.2

Basepair signature

cWW-cWW

Number of instances in this motif group

35

Unit IDs

7QVP|1|L6|G|1360
7QVP|1|L6|G|1361
*
7QVP|1|L6|C|1376
7QVP|1|L6|G|1377
7QVP|1|L6|C|1378
7QVP|1|L6|C|1379

Current chains

Chain L6

28S ribosomal RNA

Nearby chains

Chain MC

60S ribosomal protein L4

Chain ML

60S ribosomal protein L13

Chain MN

60S ribosomal protein L15