IL_7QVP_221
3D structure
- PDB id
- 7QVP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human collided disome (di-ribosome) stalled on XBP1 mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GAAAG*CUAGUAGC
- Length
- 13 nucleotides
- Bulged bases
- 7QVP|1|L6|A|1650, 7QVP|1|L6|G|1654
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7QVP_221 not in the Motif Atlas
- Homologous match to IL_8C3A_030
- Geometric discrepancy: 0.0815
- The information below is about IL_8C3A_030
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_17470.7
- Basepair signature
- cWW-tWW-L-R-tWH-L-cWW
- Number of instances in this motif group
- 7
Unit IDs
7QVP|1|L6|G|1522
7QVP|1|L6|A|1523
7QVP|1|L6|A|1524
7QVP|1|L6|A|1525
7QVP|1|L6|G|1526
*
7QVP|1|L6|C|1648
7QVP|1|L6|U|1649
7QVP|1|L6|A|1650
7QVP|1|L6|G|1651
7QVP|1|L6|U|1652
7QVP|1|L6|A|1653
7QVP|1|L6|G|1654
7QVP|1|L6|C|1655
Current chains
- Chain L6
- 28S ribosomal RNA
Nearby chains
- Chain MC
- 60S ribosomal protein L4
- Chain ML
- 60S ribosomal protein L13
- Chain MN
- 60S ribosomal protein L15
- Chain Ma
- 60S ribosomal protein L27a
- Chain Mj
- Ribosomal protein L37
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