IL_7QVP_229

3D structure

PDB id

7QVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human collided disome (di-ribosome) stalled on XBP1 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GCUG*CUAGU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QVP_229 not in the Motif Atlas

Geometric match to IL_8C3A_009

Geometric discrepancy: 0.3547

The information below is about IL_8C3A_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_90170.1

Basepair signature

cWW-L-R-L-cWW-cWW

Number of instances in this motif group

5

Unit IDs

7QVP|1|L6|G|1685
7QVP|1|L6|C|1686
7QVP|1|L6|U|1687
7QVP|1|L6|G|1688
*
7QVP|1|L6|C|1848
7QVP|1|L6|U|1849
7QVP|1|L6|A|1850
7QVP|1|L6|G|1851
7QVP|1|L6|U|1852

Current chains

Chain L6

28S ribosomal RNA

Nearby chains

Chain ML

60S ribosomal protein L13

Chain MQ

60S ribosomal protein L18

Chain MT

60S ribosomal protein L21

Chain Ma

60S ribosomal protein L27a

Chain Mb

60S ribosomal protein L29