IL_7QVP_235

3D structure

PDB id

7QVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human collided disome (di-ribosome) stalled on XBP1 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAUUA*UUCUC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QVP_235 not in the Motif Atlas

Homologous match to IL_8C3A_044

Geometric discrepancy: 0.1011

The information below is about IL_8C3A_044

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

7QVP|1|L6|G|1745
7QVP|1|L6|A|1746
7QVP|1|L6|U|1747
7QVP|1|L6|U|1748
7QVP|1|L6|A|1749
*
7QVP|1|L6|U|1781
7QVP|1|L6|U|1782
7QVP|1|L6|C|1783
7QVP|1|L6|U|1784
7QVP|1|L6|C|1785

Current chains

Chain L6

28S ribosomal RNA

Nearby chains

Chain L9

5S ribosomal RNA; 5S rRNA

Chain MD

60S ribosomal protein L5

Chain MI

60S ribosomal protein L10-like