IL_7QVP_271

3D structure

PDB id

7QVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human collided disome (di-ribosome) stalled on XBP1 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AGUCGG*CUGU

Length

10 nucleotides

Bulged bases

7QVP|1|L6|G|3839

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QVP_271 not in the Motif Atlas

Geometric match to IL_5TBW_077

Geometric discrepancy: 0.1269

The information below is about IL_5TBW_077

Detailed Annotation

Intercalated tWH

Broad Annotation

Intercalated tWH

Motif group

IL_06455.1

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

7

Unit IDs

7QVP|1|L6|A|2850
7QVP|1|L6|G|2851
7QVP|1|L6|U|2852
7QVP|1|L6|C|2853
7QVP|1|L6|G|2854
7QVP|1|L6|G|2855
*
7QVP|1|L6|C|3837
7QVP|1|L6|U|3838
7QVP|1|L6|G|3839
7QVP|1|L6|U|3840

Current chains

Chain L6

28S ribosomal RNA

Nearby chains

Chain MB

60S ribosomal protein L3

Chain MV

60S ribosomal protein L23