IL_7QVP_272

3D structure

PDB id

7QVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human collided disome (di-ribosome) stalled on XBP1 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGUAAC*GGAUAAG

Length

13 nucleotides

Bulged bases

7QVP|1|L6|U|2880

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QVP_272 not in the Motif Atlas

Geometric match to IL_4V9F_063

Geometric discrepancy: 0.0899

The information below is about IL_4V9F_063

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_20700.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

10

Unit IDs

7QVP|1|L6|C|2867
7QVP|1|L6|G|2868
7QVP|1|L6|U|2869
7QVP|1|L6|A|2870
7QVP|1|L6|A|2871
7QVP|1|L6|C|2872
*
7QVP|1|L6|G|2877
7QVP|1|L6|G|2878
7QVP|1|L6|A|2879
7QVP|1|L6|U|2880
7QVP|1|L6|A|2881
7QVP|1|L6|A|2882
7QVP|1|L6|G|2883

Current chains

Chain L6

28S ribosomal RNA

Nearby chains

Chain Mp

60S ribosomal protein L37a

Chain S3

Small subunit ribosomal RNA; SSU rRNA