IL_7QVP_283

3D structure

PDB id

7QVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human collided disome (di-ribosome) stalled on XBP1 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CCAAAUGCCUCG*CGCG

Length

16 nucleotides

Bulged bases

7QVP|1|L6|A|3785, 7QVP|1|L6|C|3791, 7QVP|1|L6|C|3810

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QVP_283 not in the Motif Atlas

Homologous match to IL_8C3A_095

Geometric discrepancy: 0.0821

The information below is about IL_8C3A_095

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66080.1

Basepair signature

cWW-cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

7QVP|1|L6|C|3781
7QVP|1|L6|C|3782
7QVP|1|L6|A|3783
7QVP|1|L6|A|3784
7QVP|1|L6|A|3785
7QVP|1|L6|U|3786
7QVP|1|L6|G|3787
7QVP|1|L6|C|3788
7QVP|1|L6|C|3789
7QVP|1|L6|U|3790
7QVP|1|L6|C|3791
7QVP|1|L6|G|3792
*
7QVP|1|L6|C|3808
7QVP|1|L6|G|3809
7QVP|1|L6|C|3810
7QVP|1|L6|G|3811

Current chains

Chain L6

28S ribosomal RNA

Nearby chains

Chain D5

Transfer RNA; tRNA

Chain Mn

60S ribosomal protein L41

Chain S3

Small subunit ribosomal RNA; SSU rRNA