IL_7QVP_317

3D structure

PDB id

7QVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human collided disome (di-ribosome) stalled on XBP1 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAGC*GAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QVP_317 not in the Motif Atlas

Geometric match to IL_4V88_438

Geometric discrepancy: 0.2529

The information below is about IL_4V88_438

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

7QVP|1|L6|G|4743
7QVP|1|L6|A|4744
7QVP|1|L6|G|4745
7QVP|1|L6|C|4746
*
7QVP|1|L6|G|4954
7QVP|1|L6|A|4955
7QVP|1|L6|A|4956
7QVP|1|L6|C|4957

Current chains

Chain L6

28S ribosomal RNA

Nearby chains