IL_7QVP_326

3D structure

PDB id

7QVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human collided disome (di-ribosome) stalled on XBP1 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGG*CAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QVP_326 not in the Motif Atlas

Geometric match to IL_3DIL_006

Geometric discrepancy: 0.1227

The information below is about IL_3DIL_006

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

213

Unit IDs

7QVP|1|L6|G|4992
7QVP|1|L6|G|4993
7QVP|1|L6|G|4994
*
7QVP|1|L6|C|5057
7QVP|1|L6|A|5058
7QVP|1|L6|C|5059

Current chains

Chain L6

28S ribosomal RNA

Nearby chains

Chain MB

60S ribosomal protein L3

Chain Md

60S ribosomal protein L31