IL_7QVP_344
3D structure
- PDB id
- 7QVP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human collided disome (di-ribosome) stalled on XBP1 mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GUUAGUAC*GGAAUAC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7QVP_344 not in the Motif Atlas
- Homologous match to IL_5TBW_377
- Geometric discrepancy: 0.2742
- The information below is about IL_5TBW_377
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.8
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
7QVP|1|L9|G|71
7QVP|1|L9|U|72
7QVP|1|L9|U|73
7QVP|1|L9|A|74
7QVP|1|L9|G|75
7QVP|1|L9|U|76
7QVP|1|L9|A|77
7QVP|1|L9|C|78
*
7QVP|1|L9|G|98
7QVP|1|L9|G|99
7QVP|1|L9|A|100
7QVP|1|L9|A|101
7QVP|1|L9|U|102
7QVP|1|L9|A|103
7QVP|1|L9|C|104
Current chains
- Chain L9
- 5S ribosomal RNA
Nearby chains
- Chain L6
- Large subunit ribosomal RNA; LSU rRNA
- Chain MD
- 60S ribosomal protein L5
- Chain MF
- 60S ribosomal protein L7
- Chain MI
- 60S ribosomal protein L10-like
- Chain MS
- 60S ribosomal protein L18a
- Chain MT
- 60S ribosomal protein L21
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