IL_7QVP_366
3D structure
- PDB id
- 7QVP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human collided disome (di-ribosome) stalled on XBP1 mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- UAUCAA*UGACCACG
- Length
- 14 nucleotides
- Bulged bases
- 7QVP|1|S2|U|361, 7QVP|1|S2|C|399
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7QVP_366 not in the Motif Atlas
- Geometric match to IL_5J7L_014
- Geometric discrepancy: 0.12
- The information below is about IL_5J7L_014
- Detailed Annotation
- Kink-turn with non-sequential stacking
- Broad Annotation
- Kink-turn
- Motif group
- IL_46174.3
- Basepair signature
- cWW-cSS-tSS-tSH-L-cWW-tHW-cWW
- Number of instances in this motif group
- 5
Unit IDs
7QVP|1|S2|U|359
7QVP|1|S2|A|360
7QVP|1|S2|U|361
7QVP|1|S2|C|362
7QVP|1|S2|A|363
7QVP|1|S2|A|364
*
7QVP|1|S2|U|396
7QVP|1|S2|G|397
7QVP|1|S2|A|398
7QVP|1|S2|C|399
7QVP|1|S2|C|400
7QVP|1|S2|A|401
7QVP|1|S2|C|402
7QVP|1|S2|G|403
Current chains
- Chain S2
- 18S ribosomal RNA
Nearby chains
- Chain L5
- Large subunit ribosomal RNA; LSU rRNA
- Chain SI
- 40S ribosomal protein S8
- Chain SL
- 40S ribosomal protein S11
- Chain SX
- 40S ribosomal protein S23
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