IL_7QVP_370

3D structure

PDB id

7QVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human collided disome (di-ribosome) stalled on XBP1 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAU*AAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QVP_370 not in the Motif Atlas

Geometric match to IL_3NJ7_004

Geometric discrepancy: 0.1396

The information below is about IL_3NJ7_004

Detailed Annotation

Isolated near basepair

Broad Annotation

Isolated near basepair

Motif group

IL_42997.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

23

Unit IDs

7QVP|1|S2|C|459
7QVP|1|S2|A|460
7QVP|1|S2|U|461
*
7QVP|1|S2|A|468
7QVP|1|S2|A|469
7QVP|1|S2|G|470

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain LV

60S ribosomal protein L23

Chain SG

40S ribosomal protein S6

Chain SY

40S ribosomal protein S24