IL_7QVP_425

3D structure

PDB id

7QVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human collided disome (di-ribosome) stalled on XBP1 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

7QVP|1|S2|C|1701, 7QVP|1|S2|A|1835

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QVP_425 not in the Motif Atlas

Geometric match to IL_4V88_463

Geometric discrepancy: 0.1748

The information below is about IL_4V88_463

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

7QVP|1|S2|C|1700
7QVP|1|S2|C|1701
7QVP|1|S2|G|1702
*
7QVP|1|S2|C|1833
7QVP|1|S2|A|1834
7QVP|1|S2|A|1835
7QVP|1|S2|G|1836

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain A4

mRNA

Chain B4

Transfer RNA; tRNA

Chain Sa

40S ribosomal protein S26