IL_7QVP_444
3D structure
- PDB id
- 7QVP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human collided disome (di-ribosome) stalled on XBP1 mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- UACGCA*UGAAA
- Length
- 11 nucleotides
- Bulged bases
- 7QVP|1|S3|C|65, 7QVP|1|S3|C|67
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7QVP_444 not in the Motif Atlas
- Geometric match to IL_4V88_390
- Geometric discrepancy: 0.1718
- The information below is about IL_4V88_390
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_87517.1
- Basepair signature
- cWW-L-R-L-R-tHS-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
7QVP|1|S3|U|63
7QVP|1|S3|A|64
7QVP|1|S3|C|65
7QVP|1|S3|G|66
7QVP|1|S3|C|67
7QVP|1|S3|A|68
*
7QVP|1|S3|U|81
7QVP|1|S3|G|82
7QVP|1|S3|A|83
7QVP|1|S3|A|84
7QVP|1|S3|A|85
Current chains
- Chain S3
- 18S ribosomal RNA
Nearby chains
- Chain RG
- 40S ribosomal protein S6
- Chain RY
- 40S ribosomal protein S24
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