IL_7QVP_462

3D structure

PDB id

7QVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human collided disome (di-ribosome) stalled on XBP1 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CCACU*AG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QVP_462 not in the Motif Atlas

Geometric match to IL_5J7L_018

Geometric discrepancy: 0.2009

The information below is about IL_5J7L_018

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_03109.3

Basepair signature

cWW-cWS-tWH-cWW-L

Number of instances in this motif group

6

Unit IDs

7QVP|1|S3|C|491
7QVP|1|S3|C|492
7QVP|1|S3|A|493
7QVP|1|S3|C|494
7QVP|1|S3|U|495
*
7QVP|1|S3|A|508
7QVP|1|S3|G|509

Current chains

Chain S3

18S ribosomal RNA

Nearby chains

Chain RE

40S ribosomal protein S4, X isoform

Chain RJ

40S ribosomal protein S9

Chain RY

40S ribosomal protein S24