IL_7QVP_467

3D structure

PDB id

7QVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human collided disome (di-ribosome) stalled on XBP1 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUCCA*UUAAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QVP_467 not in the Motif Atlas

Geometric match to IL_4V88_422

Geometric discrepancy: 0.2936

The information below is about IL_4V88_422

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

7QVP|1|S3|G|565
7QVP|1|S3|U|566
7QVP|1|S3|C|567
7QVP|1|S3|C|568
7QVP|1|S3|A|569
*
7QVP|1|S3|U|581
7QVP|1|S3|U|582
7QVP|1|S3|A|583
7QVP|1|S3|A|584
7QVP|1|S3|C|585

Current chains

Chain S3

18S ribosomal RNA

Nearby chains

Chain RJ

40S ribosomal protein S9

Chain RY

40S ribosomal protein S24