IL_7QVP_474

3D structure

PDB id

7QVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human collided disome (di-ribosome) stalled on XBP1 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GCG*CCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QVP_474 not in the Motif Atlas

Geometric match to IL_3RG5_002

Geometric discrepancy: 0.1536

The information below is about IL_3RG5_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_68118.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

28

Unit IDs

7QVP|1|S3|G|694
7QVP|1|S3|C|695
7QVP|1|S3|G|696
*
7QVP|1|S3|C|734
7QVP|1|S3|C|735
7QVP|1|S3|C|736

Current chains

Chain S3

18S ribosomal RNA

Nearby chains

Chain RH

40S ribosomal protein S7

Chain RW

40S ribosomal protein S15a