IL_7QVP_476

3D structure

PDB id

7QVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human collided disome (di-ribosome) stalled on XBP1 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AC*GAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QVP_476 not in the Motif Atlas

Geometric match to IL_4V88_423

Geometric discrepancy: 0.1629

The information below is about IL_4V88_423

Detailed Annotation

Major groove minor groove platform; mini C-loop

Broad Annotation

No text annotation

Motif group

IL_68140.1

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

19

Unit IDs

7QVP|1|S3|A|802
7QVP|1|S3|C|803
*
7QVP|1|S3|G|860
7QVP|1|S3|A|861
7QVP|1|S3|A|862
7QVP|1|S3|U|863

Current chains

Chain S3

18S ribosomal RNA

Nearby chains

Chain RH

40S ribosomal protein S7

Chain RL

40S ribosomal protein S11

Chain RW

40S ribosomal protein S15a

Chain RX

40S ribosomal protein S23