IL_7QVP_478
3D structure
- PDB id
- 7QVP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human collided disome (di-ribosome) stalled on XBP1 mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GAAAAAAUU*ACCGCAGC
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7QVP_478 not in the Motif Atlas
- Geometric match to IL_4V88_425
- Geometric discrepancy: 0.3191
- The information below is about IL_4V88_425
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_53064.1
- Basepair signature
- cWW-cWW-L-R-L-R-L-R-L-R-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
7QVP|1|S3|G|807
7QVP|1|S3|A|808
7QVP|1|S3|A|809
7QVP|1|S3|A|810
7QVP|1|S3|A|811
7QVP|1|S3|A|812
7QVP|1|S3|A|813
7QVP|1|S3|U|814
7QVP|1|S3|U|815
*
7QVP|1|S3|A|849
7QVP|1|S3|C|850
7QVP|1|S3|C|851
7QVP|1|S3|G|852
7QVP|1|S3|C|853
7QVP|1|S3|A|854
7QVP|1|S3|G|855
7QVP|1|S3|C|856
Current chains
- Chain S3
- 18S ribosomal RNA
Nearby chains
- Chain RE
- 40S ribosomal protein S4, X isoform
- Chain RJ
- 40S ribosomal protein S9
- Chain RL
- 40S ribosomal protein S11
- Chain RW
- 40S ribosomal protein S15a
Coloring options: