IL_7QVP_490
3D structure
- PDB id
- 7QVP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human collided disome (di-ribosome) stalled on XBP1 mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CGA*UCUUUGG
- Length
- 10 nucleotides
- Bulged bases
- 7QVP|1|S3|C|1153, 7QVP|1|S3|U|1155, 7QVP|1|S3|G|1157
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7QVP_490 not in the Motif Atlas
- Geometric match to IL_4V88_437
- Geometric discrepancy: 0.1322
- The information below is about IL_4V88_437
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_62898.1
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
7QVP|1|S3|C|1091
7QVP|1|S3|G|1092
7QVP|1|S3|A|1093
*
7QVP|1|S3|U|1152
7QVP|1|S3|C|1153
7QVP|1|S3|U|1154
7QVP|1|S3|U|1155
7QVP|1|S3|U|1156
7QVP|1|S3|G|1157
7QVP|1|S3|G|1158
Current chains
- Chain S3
- 18S ribosomal RNA
Nearby chains
- Chain RC
- 40S ribosomal protein S2
- Chain RL
- 40S ribosomal protein S11
- Chain RN
- 40S ribosomal protein S13
- Chain RW
- 40S ribosomal protein S15a
- Chain RX
- 40S ribosomal protein S23
- Chain Rb
- 40S ribosomal protein S27
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