IL_7QVP_500

3D structure

PDB id

7QVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human collided disome (di-ribosome) stalled on XBP1 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GCC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QVP_500 not in the Motif Atlas

Geometric match to IL_6IA2_002

Geometric discrepancy: 0.1133

The information below is about IL_6IA2_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

213

Unit IDs

7QVP|1|S3|G|1270
7QVP|1|S3|C|1271
7QVP|1|S3|C|1272
*
7QVP|1|S3|G|1510
7QVP|1|S3|U|1511
7QVP|1|S3|C|1512

Current chains

Chain S3

18S ribosomal RNA

Nearby chains

Chain RK

40S ribosomal protein S10

Chain Rd

40S ribosomal protein S29

Chain Rh

Ubiquitin-40S ribosomal protein S27a