IL_7QVP_504

3D structure

PDB id

7QVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human collided disome (di-ribosome) stalled on XBP1 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

7QVP|1|S3|U|1326

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QVP_504 not in the Motif Atlas

Geometric match to IL_3MEI_001

Geometric discrepancy: 0.1243

The information below is about IL_3MEI_001

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

147

Unit IDs

7QVP|1|S3|G|1325
7QVP|1|S3|U|1326
7QVP|1|S3|G|1327
*
7QVP|1|S3|C|1502
7QVP|1|S3|C|1503

Current chains

Chain S3

18S ribosomal RNA

Nearby chains

Chain RK

40S ribosomal protein S10

Chain Rd

40S ribosomal protein S29