IL_7QVP_507

3D structure

PDB id

7QVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human collided disome (di-ribosome) stalled on XBP1 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CG*CAG

Length

5 nucleotides

Bulged bases

7QVP|1|S3|A|1489

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QVP_507 not in the Motif Atlas

Geometric match to IL_4V88_452

Geometric discrepancy: 0.185

The information below is about IL_4V88_452

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

7QVP|1|S3|C|1337
7QVP|1|S3|G|1338
*
7QVP|1|S3|C|1488
7QVP|1|S3|A|1489
7QVP|1|S3|G|1490

Current chains

Chain S3

18S ribosomal RNA

Nearby chains

Chain A5

mRNA

Chain D5

Transfer RNA; tRNA

Chain RC

40S ribosomal protein S2

Chain RD

40S ribosomal protein S3

Chain RU

40S ribosomal protein S20

Chain Rd

40S ribosomal protein S29