IL_7QVP_511

3D structure

PDB id

7QVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human collided disome (di-ribosome) stalled on XBP1 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAUGC*GAGG

Length

9 nucleotides

Bulged bases

7QVP|1|S3|U|1397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7QVP|1|S3|C|1395
7QVP|1|S3|A|1396
7QVP|1|S3|U|1397
7QVP|1|S3|G|1398
7QVP|1|S3|C|1399
*
7QVP|1|S3|G|1447
7QVP|1|S3|A|1448
7QVP|1|S3|G|1449
7QVP|1|S3|G|1450

Current chains

Chain S3

18S ribosomal RNA

Nearby chains

Chain RQ

40S ribosomal protein S16

Chain RR

40S ribosomal protein S17

Chain RU

40S ribosomal protein S20

Chain Rg

Receptor of activated protein C kinase 1