IL_7QVP_512

3D structure

PDB id

7QVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human collided disome (di-ribosome) stalled on XBP1 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

ACUA*UUCU

Length

8 nucleotides

Bulged bases

7QVP|1|S3|C|1403, 7QVP|1|S3|U|1404

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QVP_512 not in the Motif Atlas

Geometric match to IL_4V88_456

Geometric discrepancy: 0.1485

The information below is about IL_4V88_456

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_76458.1

Basepair signature

cWW-cSH-L-cWW

Number of instances in this motif group

2

Unit IDs

7QVP|1|S3|A|1402
7QVP|1|S3|C|1403
7QVP|1|S3|U|1404
7QVP|1|S3|A|1405
*
7QVP|1|S3|U|1441
7QVP|1|S3|U|1442
7QVP|1|S3|C|1443
7QVP|1|S3|U|1444

Current chains

Chain S3

18S ribosomal RNA

Nearby chains

Chain RQ

40S ribosomal protein S16

Chain RU

40S ribosomal protein S20

Chain Rg

Receptor of activated protein C kinase 1