IL_7QVP_529

3D structure

PDB id

7QVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human collided disome (di-ribosome) stalled on XBP1 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGGAU*AGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QVP_529 not in the Motif Atlas

Geometric match to IL_4V88_474

Geometric discrepancy: 0.1443

The information below is about IL_4V88_474

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_95716.2

Basepair signature

cWW-cWW-tHS-tHS-tSH-cWW

Number of instances in this motif group

18

Unit IDs

7QVP|1|S3|C|1742
7QVP|1|S3|G|1743
7QVP|1|S3|G|1744
7QVP|1|S3|A|1745
7QVP|1|S3|U|1746
*
7QVP|1|S3|A|1788
7QVP|1|S3|G|1789
7QVP|1|S3|A|1790
7QVP|1|S3|A|1791
7QVP|1|S3|G|1792

Current chains

Chain S3

18S ribosomal RNA

Nearby chains

Chain MW

60S ribosomal protein L24

Chain RG

40S ribosomal protein S6

Chain RI

40S ribosomal protein S8