IL_7QWQ_035

3D structure

PDB id

7QWQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of ribosome nascent chain with SRP and NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.83 Å

Loop

Sequence

GCC*GCGAC

Length

8 nucleotides

Bulged bases

7QWQ|1|5|G|666

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QWQ_035 not in the Motif Atlas

Geometric match to IL_3C3Z_002

Geometric discrepancy: 0.3479

The information below is about IL_3C3Z_002

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_53541.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

7QWQ|1|5|G|488
7QWQ|1|5|C|489
7QWQ|1|5|C|490
*
7QWQ|1|5|G|664
7QWQ|1|5|C|665
7QWQ|1|5|G|666
7QWQ|1|5|A|667
7QWQ|1|5|C|668

Current chains

Chain 5

28S rRNA

Nearby chains

Chain C

60S ribosomal protein L4

Chain r

60S ribosomal protein L28