IL_7QWQ_094

3D structure

PDB id

7QWQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of ribosome nascent chain with SRP and NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.83 Å

Loop

Sequence

GAGUGG*CGC

Length

9 nucleotides

Bulged bases

7QWQ|1|5|G|2546

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QWQ_094 not in the Motif Atlas

Geometric match to IL_5TBW_145

Geometric discrepancy: 0.2844

The information below is about IL_5TBW_145

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_54650.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

7QWQ|1|5|G|2542
7QWQ|1|5|A|2543
7QWQ|1|5|G|2544
7QWQ|1|5|U|2545
7QWQ|1|5|G|2546
7QWQ|1|5|G|2547
*
7QWQ|1|5|C|2772
7QWQ|1|5|G|2773
7QWQ|1|5|C|2774

Current chains

Chain 5

28S rRNA

Nearby chains

Chain 8

5.8S ribosomal RNA; 5.8S rRNA

Chain k

60S ribosomal protein L38