IL_7QWR_023

3D structure

PDB id

7QWR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ribosome-nascent chain containing an ER signal sequence in complex with NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GCC*GCGAC

Length

8 nucleotides

Bulged bases

7QWR|1|5|G|666

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QWR_023 not in the Motif Atlas

Geometric match to IL_3C3Z_002

Geometric discrepancy: 0.3061

The information below is about IL_3C3Z_002

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_31737.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

7QWR|1|5|G|488
7QWR|1|5|C|489
7QWR|1|5|C|490
*
7QWR|1|5|G|664
7QWR|1|5|C|665
7QWR|1|5|G|666
7QWR|1|5|A|667
7QWR|1|5|C|668

Current chains

Chain 5

28S rRNA

Nearby chains

Chain C

60S ribosomal protein L4

Chain r

60S ribosomal protein L28