IL_7QWR_038

3D structure

PDB id

7QWR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ribosome-nascent chain containing an ER signal sequence in complex with NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUCC*GGCCCG

Length

10 nucleotides

Bulged bases

7QWR|1|5|C|1214

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QWR_038 not in the Motif Atlas

Geometric match to IL_7VYX_002

Geometric discrepancy: 0.3216

The information below is about IL_7VYX_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

7QWR|1|5|C|1082
7QWR|1|5|U|1083
7QWR|1|5|C|1084
7QWR|1|5|C|1085
*
7QWR|1|5|G|1212
7QWR|1|5|G|1213
7QWR|1|5|C|1214
7QWR|1|5|C|1215
7QWR|1|5|C|1216
7QWR|1|5|G|1217

Current chains

Chain 5

28S rRNA

Nearby chains

Chain C

60S ribosomal protein L4

Chain F

uL30