3D structure

PDB id
7QWR (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the ribosome-nascent chain containing an ER signal sequence in complex with NAC
Experimental method
ELECTRON MICROSCOPY
Resolution
2.9 Å

Loop

Sequence
GGAA*UC
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7QWR_093 not in the Motif Atlas
Geometric match to IL_7RQB_066
Geometric discrepancy: 0.1389
The information below is about IL_7RQB_066
Detailed Annotation
Major groove platform; stack outside cWW
Broad Annotation
Major groove platform
Motif group
IL_50694.2
Basepair signature
cWW-tSH-cWW-L
Number of instances in this motif group
27

Unit IDs

7QWR|1|5|G|2847
7QWR|1|5|G|2848
7QWR|1|5|A|2849
7QWR|1|5|A|2850
*
7QWR|1|5|U|3840
7QWR|1|5|C|3841

Current chains

Chain 5
28S rRNA

Nearby chains

Chain B
Ribosomal protein L3
Chain V
Ribosomal protein L23

Coloring options:


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