IL_7QWR_117

3D structure

PDB id

7QWR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ribosome-nascent chain containing an ER signal sequence in complex with NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAG*CGUGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QWR_117 not in the Motif Atlas

Geometric match to IL_7RQB_082

Geometric discrepancy: 0.231

The information below is about IL_7RQB_082

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_38958.7

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

15

Unit IDs

7QWR|1|5|C|4243
7QWR|1|5|A|4244
7QWR|1|5|G|4245
*
7QWR|1|5|C|4263
7QWR|1|5|G|4264
7QWR|1|5|U|4265
7QWR|1|5|G|4266
7QWR|1|5|G|4267

Current chains

Chain 5

28S rRNA

Nearby chains

Chain 7

5S ribosomal RNA; 5S rRNA

Chain D

Ribosomal_L18_c domain-containing protein

Chain J

Ribosomal protein L11

Chain T

60S ribosomal protein L21