IL_7QWR_134

3D structure

PDB id

7QWR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ribosome-nascent chain containing an ER signal sequence in complex with NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCAU*AGGCG

Length

9 nucleotides

Bulged bases

7QWR|1|5|C|4720

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QWR_134 not in the Motif Atlas

Geometric match to IL_5AOX_003

Geometric discrepancy: 0.2572

The information below is about IL_5AOX_003

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.2

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

43

Unit IDs

7QWR|1|5|C|4582
7QWR|1|5|C|4583
7QWR|1|5|A|4584
7QWR|1|5|U|4585
*
7QWR|1|5|A|4717
7QWR|1|5|G|4718
7QWR|1|5|G|4719
7QWR|1|5|C|4720
7QWR|1|5|G|4721

Current chains

Chain 5

28S rRNA

Nearby chains

Chain B

Ribosomal protein L3

Chain O

60S ribosomal protein L13a