IL_7QWS_164

3D structure

PDB id

7QWS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome translating beta-tubulin in complex with TTC5 and NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

AGAC*GCCU

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QWS_164 not in the Motif Atlas

Geometric match to IL_1MFQ_004

Geometric discrepancy: 0.2341

The information below is about IL_1MFQ_004

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

7QWS|1|5|A|15
7QWS|1|5|G|16
7QWS|1|5|A|17
7QWS|1|5|C|18
*
7QWS|1|8|G|139
7QWS|1|8|C|140
7QWS|1|8|C|141
7QWS|1|8|U|142

Current chains

Chain 5

28S rRNA

Chain 8

5.8S rRNA

Nearby chains

Chain N

Ribosomal protein L15

Chain X

Ribosomal_L23eN domain-containing protein

Chain h

60S ribosomal protein L35