IL_7R4X_035

3D structure

PDB id

7R4X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of the human 40S ribosomal subunit - Full map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.15 Å

Loop

Sequence

GUGCCAG*CGGUAAUUC

Length

16 nucleotides

Bulged bases

7R4X|1|2|A|628, 7R4X|1|2|U|630, 7R4X|1|2|U|631

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7R4X_035 not in the Motif Atlas

Homologous match to IL_4V88_415

Geometric discrepancy: 0.1034

The information below is about IL_4V88_415

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

7R4X|1|2|G|611
7R4X|1|2|U|612
7R4X|1|2|G|613
7R4X|1|2|C|614
7R4X|1|2|C|615
7R4X|1|2|A|616
7R4X|1|2|G|617
*
7R4X|1|2|C|624
7R4X|1|2|G|625
7R4X|1|2|G|626||A
7R4X|1|2|U|627
7R4X|1|2|A|628
7R4X|1|2|A|629
7R4X|1|2|U|630
7R4X|1|2|U|631
7R4X|1|2|C|632

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain D

40S ribosomal protein S3

Chain X

40S ribosomal protein S23

Chain e

40S ribosomal protein S30