IL_7R7A_027
3D structure
- PDB id
- 7R7A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State E1 nucleolar 60S ribosome biogenesis intermediate - Composite model
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.04 Å
Loop
- Sequence
- GUGAAG*UGGAGGC
- Length
- 13 nucleotides
- Bulged bases
- 7R7A|1|1|G|860
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7R7A_027 not in the Motif Atlas
- Geometric match to IL_3FTF_001
- Geometric discrepancy: 0.2465
- The information below is about IL_3FTF_001
- Detailed Annotation
- Quadruple sheared
- Broad Annotation
- No text annotation
- Motif group
- IL_29495.1
- Basepair signature
- cWW-tSH-tSH-tHS-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
7R7A|1|1|G|833
7R7A|1|1|U|834
7R7A|1|1|G|835
7R7A|1|1|A|836
7R7A|1|1|A|837
7R7A|1|1|G|838
*
7R7A|1|1|U|855
7R7A|1|1|G|856
7R7A|1|1|G|857
7R7A|1|1|A|858
7R7A|1|1|G|859
7R7A|1|1|G|860
7R7A|1|1|C|861
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain 8
- NOC2 isoform 1
- Chain R
- 60S ribosomal protein L19-A
- Chain w
- 27S pre-rRNA (guanosine(2922)-2'-O)-methyltransferase
Coloring options: