IL_7R7A_108
3D structure
- PDB id
- 7R7A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State E1 nucleolar 60S ribosome biogenesis intermediate - Composite model
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.04 Å
Loop
- Sequence
- GUGAAG*CUUUAC
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Self-complementary:
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7R7A_108 not in the Motif Atlas
- Geometric match to IL_4EYA_005
- Geometric discrepancy: 0.396
- The information below is about IL_4EYA_005
- Detailed Annotation
- Tandem non-canonical cWW pairs with near WC pairs
- Broad Annotation
- Tandem non-canonical cWW pairs with near WC pairs
- Motif group
- IL_82292.2
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 3
Unit IDs
7R7A|1|1|G|2435
7R7A|1|1|U|2436
7R7A|1|1|G|2437
7R7A|1|1|A|2438
7R7A|1|1|A|2439
7R7A|1|1|G|2440
*
7R7A|1|1|C|2507
7R7A|1|1|U|2508
7R7A|1|1|U|2509
7R7A|1|1|U|2510
7R7A|1|1|A|2511
7R7A|1|1|C|2512
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain 8
- NOC2 isoform 1
- Chain q
- 25S rRNA (cytosine(2870)-C(5))-methyltransferase
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