IL_7RQC_310

3D structure

PDB id

7RQC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site MFI-tripeptidyl-tRNA analog ACCA-IFM at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

G(PSU)GCCAG*CGGUAAUAC

Length

16 nucleotides

Bulged bases

7RQC|1|2a|A|532, 7RQC|1|2a|U|534

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7RQC_310 not in the Motif Atlas

Geometric match to IL_4V88_415

Geometric discrepancy: 0.2064

The information below is about IL_4V88_415

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

7RQC|1|2a|G|515
7RQC|1|2a|PSU|516
7RQC|1|2a|G|517
7RQC|1|2a|C|518
7RQC|1|2a|C|519
7RQC|1|2a|A|520
7RQC|1|2a|G|521
*
7RQC|1|2a|C|528
7RQC|1|2a|G|529
7RQC|1|2a|G|530
7RQC|1|2a|U|531
7RQC|1|2a|A|532
7RQC|1|2a|A|533
7RQC|1|2a|U|534
7RQC|1|2a|A|535
7RQC|1|2a|C|536

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2c

30S ribosomal protein S3

Chain 2d

30S ribosomal protein S4

Chain 2l

30S ribosomal protein S12

Chain 2y

Ribosome-associated inhibitor A