IL_7RQC_341

3D structure

PDB id

7RQC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site MFI-tripeptidyl-tRNA analog ACCA-IFM at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7RQC_341 not in the Motif Atlas

Homologous match to IL_4LFB_055

Geometric discrepancy: 0.0949

The information below is about IL_4LFB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57885.2

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

7RQC|1|2a|C|1303
7RQC|1|2a|G|1304
7RQC|1|2a|G|1305
7RQC|1|2a|A|1306
7RQC|1|2a|U|1307
7RQC|1|2a|U|1308
*
7RQC|1|2a|A|1329
7RQC|1|2a|U|1330
7RQC|1|2a|G|1331
7RQC|1|2a|A|1332
7RQC|1|2a|A|1333
7RQC|1|2a|G|1334

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2m

30S ribosomal protein S13

Chain 2u

30S ribosomal protein Thx