IL_7RR5_020

3D structure

PDB id

7RR5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosomal complex bound with Rbg1/Tma46

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

GAAUGUAG*UAUUAUAGC

Length

17 nucleotides

Bulged bases

7RR5|1|C1|U|534, 7RR5|1|C1|U|558

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7RR5_020 not in the Motif Atlas

Homologous match to IL_5TBW_020

Geometric discrepancy: 0.0993

The information below is about IL_5TBW_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_07703.1

Basepair signature

cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

Number of instances in this motif group

2

Unit IDs

7RR5|1|C1|G|531
7RR5|1|C1|A|532
7RR5|1|C1|A|533
7RR5|1|C1|U|534
7RR5|1|C1|G|535
7RR5|1|C1|U|536
7RR5|1|C1|A|537
7RR5|1|C1|G|538
*
7RR5|1|C1|U|553
7RR5|1|C1|A|554
7RR5|1|C1|U|555
7RR5|1|C1|U|556
7RR5|1|C1|A|557
7RR5|1|C1|U|558
7RR5|1|C1|A|559
7RR5|1|C1|G|560
7RR5|1|C1|C|561

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LM

60S ribosomal protein L14-A

Chain LS

60S ribosomal protein L20-A