IL_7RR5_060

3D structure

PDB id

7RR5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosomal complex bound with Rbg1/Tma46

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

GUAGUAG*CGAAAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7RR5_060 not in the Motif Atlas

Homologous match to IL_8C3A_065

Geometric discrepancy: 0.0754

The information below is about IL_8C3A_065

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_76042.3

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

7RR5|1|C1|G|1444
7RR5|1|C1|U|1445
7RR5|1|C1|A|1446
7RR5|1|C1|G|1447
7RR5|1|C1|U|1448
7RR5|1|C1|A|1449
7RR5|1|C1|G|1450
*
7RR5|1|C1|C|2354
7RR5|1|C1|G|2355
7RR5|1|C1|A|2356
7RR5|1|C1|A|2357
7RR5|1|C1|A|2358
7RR5|1|C1|C|2359

Current chains

Chain C1

25S rRNA

Nearby chains

Chain C3

5.8S ribosomal RNA; 5.8S rRNA

Chain LC

RPL4A isoform 1

Chain LP

60S ribosomal protein L17-A