IL_7RR5_067

3D structure

PDB id

7RR5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosomal complex bound with Rbg1/Tma46

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

UGAAU*AGGAA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7RR5_067 not in the Motif Atlas

Homologous match to IL_8C3A_073

Geometric discrepancy: 0.1684

The information below is about IL_8C3A_073

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_95716.2

Basepair signature

cWW-cWW-tHS-tHS-tSH-cWW

Number of instances in this motif group

18

Unit IDs

7RR5|1|C1|U|1645
7RR5|1|C1|G|1646
7RR5|1|C1|A|1647
7RR5|1|C1|A|1648
7RR5|1|C1|U|1649
*
7RR5|1|C1|A|1806
7RR5|1|C1|G|1807
7RR5|1|C1|G|1808
7RR5|1|C1|A|1809
7RR5|1|C1|A|1810

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LA

60S ribosomal protein L2-B

Chain LZ

60S ribosomal protein L27

Chain Lg

60S ribosomal protein L34-A