IL_7RR5_082

3D structure

PDB id

7RR5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosomal complex bound with Rbg1/Tma46

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

CGAUGG*UGUUGACG

Length

14 nucleotides

Bulged bases

7RR5|1|C1|U|2159, 7RR5|1|C1|U|2175, 7RR5|1|C1|C|2179

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7RR5_082 not in the Motif Atlas

Homologous match to IL_8C3A_088

Geometric discrepancy: 0.0962

The information below is about IL_8C3A_088

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_64509.1

Basepair signature

cWW-tWW-tWW-tSS-L-cWW

Number of instances in this motif group

2

Unit IDs

7RR5|1|C1|C|2156
7RR5|1|C1|G|2157
7RR5|1|C1|A|2158
7RR5|1|C1|U|2159
7RR5|1|C1|G|2160
7RR5|1|C1|G|2161
*
7RR5|1|C1|U|2173
7RR5|1|C1|G|2174
7RR5|1|C1|U|2175
7RR5|1|C1|U|2176
7RR5|1|C1|G|2177
7RR5|1|C1|A|2178
7RR5|1|C1|C|2179
7RR5|1|C1|G|2180

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LA

60S ribosomal protein L2-B

Chain Lp

60S ribosomal protein L43-A