IL_7RR5_100

3D structure

PDB id

7RR5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosomal complex bound with Rbg1/Tma46

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

CAU*AGUAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7RR5_100 not in the Motif Atlas

Geometric match to IL_5TBW_099

Geometric discrepancy: 0.134

The information below is about IL_5TBW_099

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_71241.2

Basepair signature

cWW-cWW-tSH-cWW-L-L

Number of instances in this motif group

7

Unit IDs

7RR5|1|C1|C|2666
7RR5|1|C1|A|2667
7RR5|1|C1|U|2668
*
7RR5|1|C1|A|2686
7RR5|1|C1|G|2687
7RR5|1|C1|U|2688
7RR5|1|C1|A|2689
7RR5|1|C1|G|2690

Current chains

Chain C1

25S rRNA

Nearby chains

Chain C4

5S ribosomal RNA; 5S rRNA

Chain LD

RPL5 isoform 1

Chain LJ

RPL11B isoform 1

Chain LT

60S ribosomal protein L21-A