3D structure

PDB id
7RR5 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of ribosomal complex bound with Rbg1/Tma46
Experimental method
ELECTRON MICROSCOPY
Resolution
3.23 Å

Loop

Sequence
UAAUU*ACCA
Length
9 nucleotides
Bulged bases
7RR5|1|C1|C|3092
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7RR5_118 not in the Motif Atlas
Homologous match to IL_5TBW_117
Geometric discrepancy: 0.15
The information below is about IL_5TBW_117
Detailed Annotation
Major groove minor groove platform with tHH
Broad Annotation
No text annotation
Motif group
IL_14592.1
Basepair signature
cWW-tHH-cWW-L-L
Number of instances in this motif group
4

Unit IDs

7RR5|1|C1|U|3047
7RR5|1|C1|A|3048
7RR5|1|C1|A|3049
7RR5|1|C1|U|3050
7RR5|1|C1|U|3051
*
7RR5|1|C1|A|3091
7RR5|1|C1|C|3092
7RR5|1|C1|C|3093
7RR5|1|C1|A|3094

Current chains

Chain C1
25S rRNA

Nearby chains

Chain LB
RPL3 isoform 1
Chain LV
60S ribosomal protein L23-B
Chain LW
RPL24A isoform 1

Coloring options:


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