3D structure

PDB id
7RR5 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of ribosomal complex bound with Rbg1/Tma46
Experimental method
ELECTRON MICROSCOPY
Resolution
3.23 Å

Loop

Sequence
UAUCAA*UUUCAACG
Length
14 nucleotides
Bulged bases
7RR5|1|C2|U|313, 7RR5|1|C2|C|351
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7RR5_156 not in the Motif Atlas
Homologous match to IL_4V88_402
Geometric discrepancy: 0.1017
The information below is about IL_4V88_402
Detailed Annotation
Kink-turn with non-sequential stacking
Broad Annotation
Kink-turn
Motif group
IL_45067.5
Basepair signature
cWW-tSH-tSS-tHS-R-cWW-cWW-R
Number of instances in this motif group
16

Unit IDs

7RR5|1|C2|U|311
7RR5|1|C2|A|312
7RR5|1|C2|U|313
7RR5|1|C2|C|314
7RR5|1|C2|A|315
7RR5|1|C2|A|316
*
7RR5|1|C2|U|348
7RR5|1|C2|U|349
7RR5|1|C2|U|350
7RR5|1|C2|C|351
7RR5|1|C2|A|352
7RR5|1|C2|A|353
7RR5|1|C2|C|354
7RR5|1|C2|G|355

Current chains

Chain C2
18S rRNA

Nearby chains

Chain SI
RPS8A isoform 1
Chain SL
40S ribosomal protein S11-B
Chain SX
40S ribosomal protein S23

Coloring options:


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