3D structure

PDB id
7RR5 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of ribosomal complex bound with Rbg1/Tma46
Experimental method
ELECTRON MICROSCOPY
Resolution
3.23 Å

Loop

Sequence
GUGCCAG*CGGUAAUUC
Length
16 nucleotides
Bulged bases
7RR5|1|C2|A|579, 7RR5|1|C2|U|581, 7RR5|1|C2|U|582
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7RR5_169 not in the Motif Atlas
Homologous match to IL_4V88_415
Geometric discrepancy: 0.1543
The information below is about IL_4V88_415
Detailed Annotation
Kink-turn related
Broad Annotation
No text annotation
Motif group
IL_54177.1
Basepair signature
cWW-cSW-tWH-L-R-L-R-tHS-cWW
Number of instances in this motif group
5

Unit IDs

7RR5|1|C2|G|562
7RR5|1|C2|U|563
7RR5|1|C2|G|564
7RR5|1|C2|C|565
7RR5|1|C2|C|566
7RR5|1|C2|A|567
7RR5|1|C2|G|568
*
7RR5|1|C2|C|575
7RR5|1|C2|G|576
7RR5|1|C2|G|577
7RR5|1|C2|U|578
7RR5|1|C2|A|579
7RR5|1|C2|A|580
7RR5|1|C2|U|581
7RR5|1|C2|U|582
7RR5|1|C2|C|583

Current chains

Chain C2
18S rRNA

Nearby chains

Chain A
Transfer RNA; tRNA
Chain SD
RPS3 isoform 1
Chain SX
40S ribosomal protein S23
Chain Se
40S ribosomal protein S30
Chain m
mRNA

Coloring options:


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