IL_7RR5_169
3D structure
- PDB id
- 7RR5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of ribosomal complex bound with Rbg1/Tma46
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.23 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUUC
- Length
- 16 nucleotides
- Bulged bases
- 7RR5|1|C2|A|579, 7RR5|1|C2|U|581, 7RR5|1|C2|U|582
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7RR5_169 not in the Motif Atlas
- Homologous match to IL_4V88_415
- Geometric discrepancy: 0.1543
- The information below is about IL_4V88_415
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
7RR5|1|C2|G|562
7RR5|1|C2|U|563
7RR5|1|C2|G|564
7RR5|1|C2|C|565
7RR5|1|C2|C|566
7RR5|1|C2|A|567
7RR5|1|C2|G|568
*
7RR5|1|C2|C|575
7RR5|1|C2|G|576
7RR5|1|C2|G|577
7RR5|1|C2|U|578
7RR5|1|C2|A|579
7RR5|1|C2|A|580
7RR5|1|C2|U|581
7RR5|1|C2|U|582
7RR5|1|C2|C|583
Current chains
- Chain C2
- 18S rRNA
Nearby chains
- Chain A
- Transfer RNA; tRNA
- Chain SD
- RPS3 isoform 1
- Chain SX
- 40S ribosomal protein S23
- Chain Se
- 40S ribosomal protein S30
- Chain m
- mRNA
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