IL_7RR5_170

3D structure

PDB id

7RR5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosomal complex bound with Rbg1/Tma46

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

GUUAAAA*UC

Length

9 nucleotides

Bulged bases

7RR5|1|C2|A|619

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7RR5_170 not in the Motif Atlas

Homologous match to IL_4V88_416

Geometric discrepancy: 0.1566

The information below is about IL_4V88_416

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.3

Basepair signature

cWW-L-cWW-R-L-R

Number of instances in this motif group

5

Unit IDs

7RR5|1|C2|G|616
7RR5|1|C2|U|617
7RR5|1|C2|U|618
7RR5|1|C2|A|619
7RR5|1|C2|A|620
7RR5|1|C2|A|621
7RR5|1|C2|A|622
*
7RR5|1|C2|U|1104
7RR5|1|C2|C|1105

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SX

40S ribosomal protein S23

Chain Sa

RPS26B isoform 1