3D structure

PDB id
7RR5 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of ribosomal complex bound with Rbg1/Tma46
Experimental method
ELECTRON MICROSCOPY
Resolution
3.23 Å

Loop

Sequence
CGGGG*CAAG
Length
9 nucleotides
Bulged bases
7RR5|1|C2|G|876
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7RR5_181 not in the Motif Atlas
Geometric match to IL_4V88_431
Geometric discrepancy: 0.1004
The information below is about IL_4V88_431
Detailed Annotation
Tandem non-canonical cWW pairs
Broad Annotation
No text annotation
Motif group
IL_67085.2
Basepair signature
cWW-cWW-cWW-cWW
Number of instances in this motif group
55

Unit IDs

7RR5|1|C2|C|874
7RR5|1|C2|G|875
7RR5|1|C2|G|876
7RR5|1|C2|G|877
7RR5|1|C2|G|878
*
7RR5|1|C2|C|950
7RR5|1|C2|A|951
7RR5|1|C2|A|952
7RR5|1|C2|G|953

Current chains

Chain C2
18S rRNA

Nearby chains

Chain SB
RPS1A isoform 1
Chain SN
40S ribosomal protein S13
Chain Sa
RPS26B isoform 1

Coloring options:


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